Today i updated to

IJ 16 EAP 144.2925

and it still has the same issue when running Kotlin programs.

Information:Kotlin: Kotlin JPS plugin version 1.0.0-beta-4584-IJ143-12
Information:1/13/16, 12:34 AM - Compilation completed with 3 errors and 0 warnings in 2s 851ms
Error:Kotlin: [Internal Error] java.lang.IllegalArgumentException: Target is expected to have output directory: Module 'appkt_test' production
	at org.jetbrains.kotlin.jps.incremental.IncrementalCacheImpl.<init>(IncrementalCacheImpl.kt:819)