afterEvaluate {
        extensions.findByName('kapt')?.arguments{
            arg("dagger.formatGeneratedSource","disabled")
            arg("dagger.gradle.incremental","enabled")
        }
    }

gradle is giving warning

The following options were not recognized by any processor: '[dagger.gradle.incremental, kapt.kotlin.generated, dagger.formatGeneratedSource]'

Maybe you don’t have dagger in one of your modules?

@gildor only for some task it is showing and that module have dagger compiler.

and uses kapt, not apt?

I guess those are modules without dagger